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  5. AMTR_s00137p00051070

AMTR_s00137p00051070 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00137.18

Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000724 (Archaeplastida) Phylogenetic Tree(s): OG0000724_tree ,
OG_05_0000483 (LandPlants) Phylogenetic Tree(s): OG_05_0000483_tree ,
OG_06_0000437 (SeedPlants) Phylogenetic Tree(s): OG_06_0000437_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00137p00051070
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AT1G68510 LBD42 LOB domain-containing protein 42 0.03 Archaeplastida
AT4G37540 LBD39 LOB domain-containing protein 39 0.02 Archaeplastida
AT5G67420 LBD37, ASL39 LOB domain-containing protein 37 0.06 Archaeplastida
GSVIVT01000141001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01011896001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
Gb_36943 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os01g03890.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os01g20800.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_223267g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_70989g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_80122g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc01g107190.3.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc04g077990.3.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc05g009320.4.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e027417_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e032150_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0004888 transmembrane signaling receptor activity IEP Neighborhood
MF GO:0004970 ionotropic glutamate receptor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005231 excitatory extracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005234 extracellularly glutamate-gated ion channel activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0008066 glutamate receptor activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0017089 glycolipid transporter activity IEP Neighborhood
MF GO:0022824 transmitter-gated ion channel activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022835 transmitter-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
CC GO:0030288 outer membrane-bounded periplasmic space IEP Neighborhood
MF GO:0030594 neurotransmitter receptor activity IEP Neighborhood
MF GO:0038023 signaling receptor activity IEP Neighborhood
CC GO:0042597 periplasmic space IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046836 glycolipid transport IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
MF GO:0051861 glycolipid binding IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 2 104
No external refs found!