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  5. AMTR_s00140p00103640

AMTR_s00140p00103640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00140.50

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL9 component


Gene families : OG0005901 (Archaeplastida) Phylogenetic Tree(s): OG0005901_tree ,
OG_05_0006317 (LandPlants) Phylogenetic Tree(s): OG_05_0006317_tree ,
OG_06_0009802 (SeedPlants) Phylogenetic Tree(s): OG_06_0009802_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00140p00103640
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT3G44890 RPL9 ribosomal protein L9 0.05 Archaeplastida
GSVIVT01031460001 No alias Protein biosynthesis.organelle translation... 0.02 Archaeplastida
LOC_Os02g57670.1 No alias component psRPL9 of large ribosomal subunit proteome 0.05 Archaeplastida
MA_8767694g0010 No alias component psRPL9 of large ribosomal subunit proteome 0.03 Archaeplastida
Mp1g05730.1 No alias component psRPL9 of large ribosomal subunit proteome 0.02 Archaeplastida
Pp3c2_34120V3.1 No alias ribosomal protein L9 0.02 Archaeplastida
Zm00001e016155_P002 No alias component psRPL9 of large ribosomal subunit proteome 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
BP GO:0006282 regulation of DNA repair IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0080134 regulation of response to stress IEP Neighborhood
BP GO:0080135 regulation of cellular response to stress IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
BP GO:2001020 regulation of response to DNA damage stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR020070 Ribosomal_L9_N 15 60
IPR020069 Ribosomal_L9_C 75 160
No external refs found!