AMTR_s00142p00081110

Description : RNA biosynthesis.siRNA biogenesis.CLSY3/4 regulator protein

Gene families : OG0000450 (Archaeplastida) Phylogenetic Tree(s): OG0000450_tree ,
OG_05_0000597 (LandPlants) Phylogenetic Tree(s): OG_05_0000597_tree ,
OG_06_0000338 (SeedPlants) Phylogenetic Tree(s): OG_06_0000338_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00142p00081110
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AT1G05490	chr31	chromatin remodeling 31	0.04	Archaeplastida
AT2G21455	No alias	No description available	0.03	Archaeplastida
GSVIVT01013277001	No alias	RNA biosynthesis.siRNA biogenesis.CLSY3/4 regulator protein	0.04	Archaeplastida
Gb_04678	No alias	RDR2-polymerase accessory protein (CLSY1/2)....	0.04	Archaeplastida
MA_15897g0010	No alias	RDR2-polymerase accessory protein (CLSY1/2)	0.03	Archaeplastida
Pp3c2_3510V3.1	No alias	SNF2 domain-containing protein / helicase...	0.02	Archaeplastida
Solyc01g068320.3.1	No alias	RDR2-polymerase regulator protein CLSY3/4	0.03	Archaeplastida
Zm00001e031599_P001	No alias	RDR2-polymerase regulator protein CLSY3/4	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	763	1062
IPR001650	Helicase_C	1175	1248

External Links

No external refs found!