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  5. AMTR_s00148p00072380

AMTR_s00148p00072380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00148.47

Description : 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000810 (LandPlants) Phylogenetic Tree(s): OG_05_0000810_tree ,
OG_06_0004328 (SeedPlants) Phylogenetic Tree(s): OG_06_0004328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00148p00072380
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.05 Archaeplastida
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.04 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.04 Archaeplastida
Cre13.g602850 No alias No description available 0.03 Archaeplastida
GSVIVT01017884001 No alias No description available 0.03 Archaeplastida
GSVIVT01022600001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.04 Archaeplastida
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.04 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01033897001 No alias Small RNA-binding protein 11, chloroplastic... 0.02 Archaeplastida
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.07 Archaeplastida
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os03g47800.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
LOC_Os10g17454.1 No alias RNA editing factor (ORRM) 0.02 Archaeplastida
LOC_Os12g31800.1 No alias RNA editing factor (ORRM) 0.03 Archaeplastida
MA_10434075g0010 No alias component psPSRP2 of small ribosomal subunit proteome 0.02 Archaeplastida
MA_1460g0010 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.05 Archaeplastida
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.09 Archaeplastida
MA_36092g0010 No alias RNA editing factor (ORRM) 0.04 Archaeplastida
MA_474396g0010 No alias RNA editing factor (CP31) 0.04 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.02 Archaeplastida
Pp3c24_17170V3.1 No alias chloroplast RNA-binding protein 29 0.02 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.04 Archaeplastida
Solyc01g006940.4.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.04 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.02 Archaeplastida
Zm00001e010844_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Zm00001e011440_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.06 Archaeplastida
Zm00001e032835_P001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.04 Archaeplastida
Zm00001e035630_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 86 156
IPR000504 RRM_dom 190 260
No external refs found!