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  5. AMTR_s00148p00073630

AMTR_s00148p00073630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00148.48

Description : Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC-type)


Gene families : OG0000137 (Archaeplastida) Phylogenetic Tree(s): OG0000137_tree ,
OG_05_0000296 (LandPlants) Phylogenetic Tree(s): OG_05_0000296_tree ,
OG_06_0001368 (SeedPlants) Phylogenetic Tree(s): OG_06_0001368_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00148p00073630

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00270020 evm_27.TU.AmTr_v1... External stimuli response.temperature.temperature... 0.03 Archaeplastida
AT1G15990 CNGC7, ATCNGC7 cyclic nucleotide gated channel 7 0.01 Archaeplastida
GSVIVT01025208001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.02 Archaeplastida
GSVIVT01029404001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.01 Archaeplastida
GSVIVT01029407001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.02 Archaeplastida
LOC_Os12g06570.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 517 611
IPR005821 Ion_trans_dom 144 412
No external refs found!