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  5. AMTR_s00149p00054910

AMTR_s00149p00054910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00149.35

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0001099 (Archaeplastida) Phylogenetic Tree(s): OG0001099_tree ,
OG_05_0001093 (LandPlants) Phylogenetic Tree(s): OG_05_0001093_tree ,
OG_06_0001843 (SeedPlants) Phylogenetic Tree(s): OG_06_0001843_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00149p00054910
Cluster HCCA: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
MA_159838g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_26803g0010 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
MA_68032g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Solyc03g063200.3.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Zm00001e006629_P001 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Zm00001e037586_P002 No alias C3H zinc finger transcription factor 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 160 222
IPR000571 Znf_CCCH 100 125
IPR000571 Znf_CCCH 254 278
No external refs found!