1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00149p00087520

AMTR_s00149p00087520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00149.75

No description available


Gene families : OG0003090 (Archaeplastida) Phylogenetic Tree(s): OG0003090_tree ,
OG_05_0003302 (LandPlants) Phylogenetic Tree(s): OG_05_0003302_tree ,
OG_06_0002669 (SeedPlants) Phylogenetic Tree(s): OG_06_0002669_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00149p00087520
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01001215001 No alias No description available 0.03 Archaeplastida
GSVIVT01003103001 No alias No description available 0.02 Archaeplastida
GSVIVT01003106001 No alias No description available 0.04 Archaeplastida
Solyc12g098390.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 160 246
IPR026961 PGG_dom 542 651
No external refs found!