AMTR_s00153p00035720 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00153.13

Description : U-box domain-containing protein 1 OS=Medicago truncatula


Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000690 (LandPlants) Phylogenetic Tree(s): OG_05_0000690_tree ,
OG_06_0016797 (SeedPlants) Phylogenetic Tree(s): OG_06_0016797_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00153p00035720
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.07 Archaeplastida
AT1G10560 PUB18, ATPUB18 plant U-box 18 0.03 Archaeplastida
AT5G01830 No alias ARM repeat superfamily protein 0.03 Archaeplastida
GSVIVT01032778001 No alias U-box domain-containing protein 1 OS=Medicago truncatula 0.04 Archaeplastida
Gb_08792 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.1 Archaeplastida
Gb_10627 No alias U-box domain-containing protein 13 OS=Arabidopsis... 0.03 Archaeplastida
Gb_24091 No alias U-box domain-containing protein 14 OS=Arabidopsis... 0.03 Archaeplastida
Gb_29129 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.05 Archaeplastida
LOC_Os05g39930.1 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os08g37570.1 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.03 Archaeplastida
MA_69133g0010 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Smo75609 No alias U-box domain-containing protein 1 OS=Medicago truncatula 0.02 Archaeplastida
Solyc06g076040.3.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Solyc09g018230.1.1 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.03 Archaeplastida
Solyc09g056450.4.1 No alias U-box domain-containing protein 9 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014377_P001 No alias U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Zm00001e028839_P001 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0047134 protein-disulfide reductase activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR003613 Ubox_domain 272 342
IPR000225 Armadillo 407 444
No external refs found!