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  5. AMTR_s00153p00073330

AMTR_s00153p00073330 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00153.37

Description : Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana


Gene families : OG0005595 (Archaeplastida) Phylogenetic Tree(s): OG0005595_tree ,
OG_05_0004944 (LandPlants) Phylogenetic Tree(s): OG_05_0004944_tree ,
OG_06_0007789 (SeedPlants) Phylogenetic Tree(s): OG_06_0007789_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00153p00073330
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT5G58470 TAF15b TBP-associated factor 15B 0.05 Archaeplastida
Gb_25472 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g07070.2 No alias Transcription initiation factor TFIID subunit 15b... 0.07 Archaeplastida
MA_10427252g0010 No alias Transcription initiation factor TFIID subunit 15b... 0.07 Archaeplastida
Mp7g03900.1 No alias Transcription initiation factor TFIID subunit 15b... 0.02 Archaeplastida
Solyc06g082220.4.1 No alias Transcription initiation factor TFIID subunit 15b... 0.08 Archaeplastida
Zm00001e016824_P001 No alias Transcription initiation factor TFIID subunit 15b... 0.04 Archaeplastida
Zm00001e025837_P001 No alias Transcription initiation factor TFIID subunit 15b... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 338 368
IPR001876 Znf_RanBP2 53 84
No external refs found!