1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00154p00072430

AMTR_s00154p00072430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00154.48

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000332 (Archaeplastida) Phylogenetic Tree(s): OG0000332_tree ,
OG_05_0000167 (LandPlants) Phylogenetic Tree(s): OG_05_0000167_tree ,
OG_06_0000105 (SeedPlants) Phylogenetic Tree(s): OG_06_0000105_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00154p00072430
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008109001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.06 Archaeplastida
GSVIVT01008234001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.1 Archaeplastida
GSVIVT01032911001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
Gb_30049 No alias transcription factor (TCP) 0.04 Archaeplastida
Gb_38376 No alias transcription factor (TCP) 0.04 Archaeplastida
Gb_38379 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os03g57190.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os07g05720.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os12g42190.1 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_101752g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_101752g0020 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_1379g0010 No alias transcription factor (TCP) 0.02 Archaeplastida
MA_16704g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_35349g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_78665g0010 No alias transcription factor (TCP) 0.05 Archaeplastida
MA_86651g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo89227 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 Archaeplastida
Solyc02g077250.2.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc02g089830.2.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc03g045030.2.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc03g115010.3.1 No alias transcription factor (TCP) 0.06 Archaeplastida
Solyc04g006980.1.1 No alias transcription factor (TCP) 0.06 Archaeplastida
Solyc05g009900.3.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Solyc05g012840.1.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc06g069240.2.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc06g069460.3.1 No alias transcription factor (TCP) 0.07 Archaeplastida
Zm00001e005909_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e011516_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e011911_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e027401_P002 No alias transcription factor (TCP) 0.02 Archaeplastida
Zm00001e032122_P001 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e032821_P001 No alias transcription factor (TCP) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 49 129
No external refs found!