AMTR_s00155p00082980 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00155.56

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0001322 (LandPlants) Phylogenetic Tree(s): OG_05_0001322_tree ,
OG_06_0001040 (SeedPlants) Phylogenetic Tree(s): OG_06_0001040_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00155p00082980
Cluster	HCCA: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
Gb_39686	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os05g48870.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os11g32110.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
MA_137387g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Pp3c1_40270V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c4_12970V3.1	No alias	auxin response factor 16	0.03	Archaeplastida
Solyc11g013480.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc11g069190.2.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e013639_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e020205_P004	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e032135_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e032423_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
BP	GO:0006551	leucine metabolic process	IEP	Neighborhood
BP	GO:0007154	cell communication	IEP	Neighborhood
MF	GO:0008026	ATP-dependent helicase activity	IEP	Neighborhood
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Neighborhood
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009098	leucine biosynthetic process	IEP	Neighborhood
BP	GO:0009432	SOS response	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009991	response to extracellular stimulus	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood
MF	GO:0070035	purine NTP-dependent helicase activity	IEP	Neighborhood
BP	GO:0071496	cellular response to external stimulus	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	147	248
IPR003311	AUX_IAA	699	784
IPR010525	Auxin_resp	307	390

External Links

No external refs found!

AMTR_s00155p00082980 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation