Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG0005757 (Archaeplastida) Phylogenetic Tree(s): OG0005757_tree ,
OG_05_0003900 (LandPlants) Phylogenetic Tree(s): OG_05_0003900_tree ,
OG_06_0002486 (SeedPlants) Phylogenetic Tree(s): OG_06_0002486_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AT1G62590
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT1G62670 RPF2 rna processing factor 2 0.05 Archaeplastida
AT1G63080 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004016 adenylate cyclase activity IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0016925 protein sumoylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019948 SUMO activating enzyme activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 121 167
IPR002885 Pentatricopeptide_repeat 398 446
IPR002885 Pentatricopeptide_repeat 188 237
IPR002885 Pentatricopeptide_repeat 471 517
IPR002885 Pentatricopeptide_repeat 259 307
IPR002885 Pentatricopeptide_repeat 538 585
IPR002885 Pentatricopeptide_repeat 328 376
No external refs found!