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  5. AMTR_s00156p00066850

AMTR_s00156p00066850 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00156.35

Description : Protein JINGUBANG OS=Arabidopsis thaliana


Gene families : OG0000380 (Archaeplastida) Phylogenetic Tree(s): OG0000380_tree ,
OG_05_0012885 (LandPlants) Phylogenetic Tree(s): OG_05_0012885_tree ,
OG_06_0012912 (SeedPlants) Phylogenetic Tree(s): OG_06_0012912_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00156p00066850
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00162370 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00059p00197160 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G47610 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
AT1G49450 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
AT5G50120 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Archaeplastida
GSVIVT01007589001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01009612001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01031882001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_26404 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_33494 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g13140.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.09 Archaeplastida
LOC_Os03g52870.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10429180g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10431396g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10431396g0020 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_107471g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_1936904g0010 No alias No annotation 0.04 Archaeplastida
MA_28858g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_913477g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c11_2770V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Archaeplastida
Pp3c4_25840V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Archaeplastida
Solyc03g111780.1.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc04g005020.3.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g044320.2.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.07 Archaeplastida
Zm00001e005608_P001 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e012074_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e016387_P001 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e026116_P001 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 136 165
IPR001680 WD40_repeat 328 357
IPR001680 WD40_repeat 91 125
IPR001680 WD40_repeat 232 268
IPR001680 WD40_repeat 366 408
IPR001680 WD40_repeat 197 225
IPR001680 WD40_repeat 281 314
No external refs found!