1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00157p00061490

AMTR_s00157p00061490 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00157.29

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0001181 (SeedPlants) Phylogenetic Tree(s): OG_06_0001181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00157p00061490
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00124260 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G60360 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT1G68180 No alias RING/U-box superfamily protein 0.08 Archaeplastida
AT2G44330 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G13228 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G56340 ATCRT1 RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01020763001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
GSVIVT01022973001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
LOC_Os06g08250.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_227599g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_3413240g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g04520.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc01g104260.3.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.07 Archaeplastida
Zm00001e017377_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e025483_P004 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e027319_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Zm00001e030803_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.03 Archaeplastida
Zm00001e038273_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0047134 protein-disulfide reductase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 144 186
No external refs found!