AT1G62830 (SWP1, ATLSD1, LDL1,...)

Aliases : SWP1, ATLSD1, LDL1, ATSWP1, LSD1

Description : LSD1-like 1

Gene families : OG0001739 (Archaeplastida) Phylogenetic Tree(s): OG0001739_tree ,
OG_05_0001723 (LandPlants) Phylogenetic Tree(s): OG_05_0001723_tree ,
OG_06_0001595 (SeedPlants) Phylogenetic Tree(s): OG_06_0001595_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G62830
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os02g51880.1	No alias	lysine-specific demethylase (LDL/KDM1)	0.04	Archaeplastida
LOC_Os08g04780.1	No alias	lysine-specific demethylase (LDL/KDM1)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006476	protein deacetylation	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008131	primary amine oxidase activity	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0016575	histone deacetylation	IMP	Interproscan
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	None	Extended
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0035601	protein deacylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048364	root development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051568	histone H3-K4 methylation	IMP	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0098732	macromolecule deacylation	None	Extended
BP	GO:0099402	plant organ development	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint	IEP	Neighborhood
BP	GO:0000077	DNA damage checkpoint	IEP	Neighborhood
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0000919	cell plate assembly	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003896	DNA primase activity	IEP	Neighborhood
MF	GO:0004003	ATP-dependent DNA helicase activity	IEP	Neighborhood
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Neighborhood
MF	GO:0004312	fatty acid synthase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004633	phosphopantothenoylcysteine decarboxylase activity	IEP	Neighborhood
MF	GO:0005539	glycosaminoglycan binding	IEP	Neighborhood
CC	GO:0005663	DNA replication factor C complex	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005675	transcription factor TFIIH holo complex	IEP	Neighborhood
CC	GO:0005680	anaphase-promoting complex	IEP	Neighborhood
CC	GO:0005819	spindle	IEP	Neighborhood
CC	GO:0005828	kinetochore microtubule	IEP	Neighborhood
CC	GO:0005876	spindle microtubule	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006783	heme biosynthetic process	IEP	Neighborhood
BP	GO:0006949	syncytium formation	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0007276	gamete generation	IEP	Neighborhood
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Neighborhood
MF	GO:0008026	ATP-dependent helicase activity	IEP	Neighborhood
BP	GO:0009409	response to cold	IEP	Neighborhood
CC	GO:0009504	cell plate	IEP	Neighborhood
BP	GO:0009560	embryo sac egg cell differentiation	IEP	Neighborhood
BP	GO:0009561	megagametogenesis	IEP	Neighborhood
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0009909	regulation of flower development	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010048	vernalization response	IEP	Neighborhood
BP	GO:0010071	root meristem specification	IEP	Neighborhood
MF	GO:0010181	FMN binding	IEP	Neighborhood
BP	GO:0010564	regulation of cell cycle process	IEP	Neighborhood
BP	GO:0015936	coenzyme A metabolic process	IEP	Neighborhood
BP	GO:0015937	coenzyme A biosynthetic process	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0031570	DNA integrity checkpoint	IEP	Neighborhood
BP	GO:0032465	regulation of cytokinesis	IEP	Neighborhood
BP	GO:0032467	positive regulation of cytokinesis	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
CC	GO:0032806	carboxy-terminal domain protein kinase complex	IEP	Neighborhood
BP	GO:0032875	regulation of DNA endoreduplication	IEP	Neighborhood
BP	GO:0032886	regulation of microtubule-based process	IEP	Neighborhood
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0040020	regulation of meiotic nuclear division	IEP	Neighborhood
BP	GO:0042168	heme metabolic process	IEP	Neighborhood
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
MF	GO:0042834	peptidoglycan binding	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
BP	GO:0045787	positive regulation of cell cycle	IEP	Neighborhood
BP	GO:0048449	floral organ formation	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048829	root cap development	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051301	cell division	IEP	Neighborhood
BP	GO:0051302	regulation of cell division	IEP	Neighborhood
BP	GO:0051445	regulation of meiotic cell cycle	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:0051781	positive regulation of cell division	IEP	Neighborhood
BP	GO:0051783	regulation of nuclear division	IEP	Neighborhood
BP	GO:0060236	regulation of mitotic spindle organization	IEP	Neighborhood
MF	GO:0070035	purine NTP-dependent helicase activity	IEP	Neighborhood
BP	GO:0070507	regulation of microtubule cytoskeleton organization	IEP	Neighborhood
BP	GO:0090068	positive regulation of cell cycle process	IEP	Neighborhood
BP	GO:0090224	regulation of spindle organization	IEP	Neighborhood
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Neighborhood
CC	GO:1902911	protein kinase complex	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood
BP	GO:2000241	regulation of reproductive process	IEP	Neighborhood
BP	GO:2000694	regulation of phragmoplast microtubule organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007526	SWIRM	171	246
IPR002937	Amino_oxidase	275	704

External Links

No external refs found!

AT1G62830 (SWP1, ATLSD1, LDL1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation