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  5. AMTR_s00164p00026810

AMTR_s00164p00026810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00164.8

Description : Cell cycle.regulation.cyclins.CYCD-type cyclin


Gene families : OG0000252 (Archaeplastida) Phylogenetic Tree(s): OG0000252_tree ,
OG_05_0007410 (LandPlants) Phylogenetic Tree(s): OG_05_0007410_tree ,
OG_06_0004640 (SeedPlants) Phylogenetic Tree(s): OG_06_0004640_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00164p00026810
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01003175001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
GSVIVT01034128001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
Gb_03361 No alias cyclin (CYCD) 0.02 Archaeplastida
LOC_Os03g42070.1 No alias cyclin (CYCD) 0.05 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_114375g0010 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_172842g0010 No alias cyclin (CYCD) 0.02 Archaeplastida
Solyc04g078470.3.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e000749_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003084_P002 No alias cyclin (CYCD) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 42 170
IPR004367 Cyclin_C-dom 172 259
No external refs found!