AMTR_s00168p00026690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00168.6

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS15a component


Gene families : OG0001596 (Archaeplastida) Phylogenetic Tree(s): OG0001596_tree ,
OG_05_0001709 (LandPlants) Phylogenetic Tree(s): OG_05_0001709_tree ,
OG_06_0002630 (SeedPlants) Phylogenetic Tree(s): OG_06_0002630_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00168p00026690
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
Cre05.g234637 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 Archaeplastida
MA_10427318g0020 No alias component RPS15a of SSU proteome 0.02 Archaeplastida
MA_82191g0010 No alias component RPS15a of SSU proteome 0.02 Archaeplastida
Pp3c11_10490V3.1 No alias Ribosomal protein S8 family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005674 transcription factor TFIIF complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000630 Ribosomal_S8 43 166
No external refs found!