1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00168p00048800

AMTR_s00168p00048800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00168.14

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00168p00048800
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.03 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.02 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.03 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_07070 No alias histone (H2A) 0.02 Archaeplastida
Gb_37579 No alias histone (H2A) 0.06 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.03 Archaeplastida
MA_9379473g0010 No alias histone (H2A) 0.02 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.02 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 26 98
No external refs found!