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  5. AMTR_s00171p00044290

AMTR_s00171p00044290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00171.23

Description : Cell wall.pectin.modification and degradation.pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00171p00044290
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AT1G04680 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.03 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.05 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.02 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g38520.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10429028g0020 No alias pectate lyase 0.03 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.03 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.02 Archaeplastida
MA_185203g0010 No alias pectate lyase 0.03 Archaeplastida
MA_474372g0010 No alias pectate lyase 0.04 Archaeplastida
MA_6474333g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.03 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c21_16990V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.02 Archaeplastida
Zm00001e029999_P001 No alias pectate lyase 0.03 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 113 304
No external refs found!