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  5. AMTR_s00173p00035440

AMTR_s00173p00035440 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00173.5

Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.PININ component


Gene families : OG0005056 (Archaeplastida) Phylogenetic Tree(s): OG0005056_tree ,
OG_05_0005081 (LandPlants) Phylogenetic Tree(s): OG_05_0005081_tree ,
OG_06_0005233 (SeedPlants) Phylogenetic Tree(s): OG_06_0005233_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00173p00035440
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
Gb_25266 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Gb_25267 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Gb_25268 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Gb_25269 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
LOC_Os03g49520.1 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
MA_49744g0010 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Mp4g01130.1 No alias component PININ of RNA quality control Exon Junction complex 0.03 Archaeplastida
Pp3c17_13310V3.1 No alias protein-protein interaction regulator family protein 0.02 Archaeplastida
Smo410528 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
Zm00001e005379_P001 No alias component PININ of RNA quality control Exon Junction complex 0.02 Archaeplastida
Zm00001e012229_P001 No alias component PININ of RNA quality control Exon Junction complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006786 Pinin_SDK_MemA 170 288
No external refs found!