1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00175p00032740

AMTR_s00175p00032740 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00175.8

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0001075 (SeedPlants) Phylogenetic Tree(s): OG_06_0001075_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00175p00032740
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AT2G28470 BGAL8 beta-galactosidase 8 0.03 Archaeplastida
AT3G13750 BGAL1 beta galactosidase 1 0.02 Archaeplastida
AT5G20710 BGAL7 beta-galactosidase 7 0.03 Archaeplastida
GSVIVT01005849001 No alias Beta-galactosidase 6 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
LOC_Os02g12730.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
LOC_Os03g06940.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
MA_10427427g0010 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
MA_10429233g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10436863g0010 No alias Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_168609g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc02g078950.4.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc07g042220.2.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e000496_P002 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Zm00001e018433_P002 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e020528_P001 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e039014_P001 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004664 prephenate dehydratase activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009094 L-phenylalanine biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001944 Glycoside_Hdrlase_35 60 364
IPR000922 Lectin_gal-bd_dom 804 881
No external refs found!