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  5. AMTR_s00175p00055870

AMTR_s00175p00055870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00175.27

Description : Chromatin organisation.chromatin remodeling complexes.RVB helicase component


Gene families : OG0005047 (Archaeplastida) Phylogenetic Tree(s): OG0005047_tree ,
OG_05_0006020 (LandPlants) Phylogenetic Tree(s): OG_05_0006020_tree ,
OG_06_0006774 (SeedPlants) Phylogenetic Tree(s): OG_06_0006774_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00175p00055870
Cluster HCCA: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
Cre09.g414050 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
Gb_29420 No alias helicase component RVB of chromatin remodeling complex 0.03 Archaeplastida
LOC_Os01g62040.1 No alias helicase component RVB of chromatin remodeling complex 0.02 Archaeplastida
LOC_Os07g08170.1 No alias helicase component RVB of chromatin remodeling complex 0.03 Archaeplastida
MA_10432659g0010 No alias helicase component RVB of chromatin remodeling complex 0.05 Archaeplastida
Solyc06g062350.4.1 No alias helicase component RVB of chromatin remodeling complex 0.03 Archaeplastida
Zm00001e013544_P001 No alias helicase component RVB of chromatin remodeling complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010339 TIP49_C 14 414
No external refs found!