AMTR_s00177p00028500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00177.5

Description : Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0003648 (Archaeplastida) Phylogenetic Tree(s): OG0003648_tree ,
OG_05_0045601 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0040183 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00177p00028500
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g26190.1 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.03 Archaeplastida
Mp1g06100.1 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.02 Archaeplastida
Smo52692 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004655 porphobilinogen synthase activity IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 212 238
IPR002885 Pentatricopeptide_repeat 109 135
IPR002885 Pentatricopeptide_repeat 240 269
IPR002885 Pentatricopeptide_repeat 137 185
IPR002885 Pentatricopeptide_repeat 35 83
No external refs found!