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  5. AMTR_s00177p00030580

AMTR_s00177p00030580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00177.9

Description : Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0020576 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0019801 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00177p00030580
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
AMTR_s00009p00268260 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00010p00260120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74600,... 0.02 Archaeplastida
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.06 Archaeplastida
AMTR_s00019p00238380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
AMTR_s00029p00062420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00032p00029450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20770... 0.09 Archaeplastida
AMTR_s00061p00035580 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.05 Archaeplastida
AMTR_s00078p00125150 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.04 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
AMTR_s00095p00039180 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
AMTR_s00103p00113040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65570... 0.04 Archaeplastida
AMTR_s00439p00010860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g34400... 0.05 Archaeplastida
Smo76175 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Solyc01g104090.4.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.07 Archaeplastida
Solyc02g072020.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc02g079380.2.1 No alias RNA editing factor (CRR22) 0.03 Archaeplastida
Solyc02g088650.1.1 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.06 Archaeplastida
Solyc03g116000.1.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.03 Archaeplastida
Solyc04g082870.1.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
Solyc06g066080.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Solyc07g005850.3.1 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
Solyc11g007230.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 323 339
IPR002885 Pentatricopeptide_repeat 65 90
IPR002885 Pentatricopeptide_repeat 293 322
IPR002885 Pentatricopeptide_repeat 119 157
IPR002885 Pentatricopeptide_repeat 219 267
No external refs found!