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  5. AMTR_s00182p00043350

AMTR_s00182p00043350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00182.23

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/DBB transcription factor


Gene families : OG0000461 (Archaeplastida) Phylogenetic Tree(s): OG0000461_tree ,
OG_05_0004244 (LandPlants) Phylogenetic Tree(s): OG_05_0004244_tree ,
OG_06_0005339 (SeedPlants) Phylogenetic Tree(s): OG_06_0005339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00182p00043350
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT1G06040 STO B-box zinc finger family protein 0.04 Archaeplastida
AT1G75540 STH2 salt tolerance homolog2 0.03 Archaeplastida
AT2G21320 No alias B-box zinc finger family protein 0.07 Archaeplastida
AT2G31380 STH salt tolerance homologue 0.06 Archaeplastida
AT4G38960 No alias B-box type zinc finger family protein 0.03 Archaeplastida
AT4G39070 No alias B-box zinc finger family protein 0.05 Archaeplastida
GSVIVT01018818001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
GSVIVT01024173001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.07 Archaeplastida
Gb_35653 No alias B-box zinc finger protein 18 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os02g39360.1 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
LOC_Os04g41560.2 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida
LOC_Os04g45690.1 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
LOC_Os06g49880.1 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
LOC_Os09g35880.1 No alias transcription factor (BBX-DBB) 0.06 Archaeplastida
Pp3c7_5280V3.1 No alias B-box type zinc finger family protein 0.03 Archaeplastida
Smo111647 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
Solyc01g110370.4.1 No alias transcription factor (BBX-DBB) 0.09 Archaeplastida
Solyc02g084420.3.1 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
Solyc06g073180.3.1 No alias transcription factor (BBX-DBB) 0.08 Archaeplastida
Solyc12g089240.2.1 No alias transcription factor (BBX-DBB) 0.04 Archaeplastida
Zm00001e007720_P001 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
Zm00001e010221_P001 No alias transcription factor (BBX-DBB) 0.07 Archaeplastida
Zm00001e015053_P001 No alias No annotation 0.05 Archaeplastida
Zm00001e022915_P001 No alias transcription factor (BBX-DBB) 0.05 Archaeplastida
Zm00001e023122_P002 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
Zm00001e030183_P001 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
Zm00001e031265_P001 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida
Zm00001e034791_P001 No alias transcription factor (BBX-DBB) 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004594 pantothenate kinase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
BP GO:0015937 coenzyme A biosynthetic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000315 Znf_B-box 52 92
IPR000315 Znf_B-box 4 33
No external refs found!