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  5. AMTR_s00182p00046810

AMTR_s00182p00046810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00182.26

Description : Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0011535 (Archaeplastida) Phylogenetic Tree(s): OG0011535_tree ,
OG_05_0011436 (LandPlants) Phylogenetic Tree(s): OG_05_0011436_tree ,
OG_06_0011540 (SeedPlants) Phylogenetic Tree(s): OG_06_0011540_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00182p00046810
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT1G71460 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003852 2-isopropylmalate synthase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005342 organic acid transmembrane transporter activity IEP Neighborhood
MF GO:0005343 organic acid:sodium symporter activity IEP Neighborhood
BP GO:0006551 leucine metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008508 bile acid:sodium symporter activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0008514 organic anion transmembrane transporter activity IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009098 leucine biosynthetic process IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015125 bile acid transmembrane transporter activity IEP Neighborhood
MF GO:0015293 symporter activity IEP Neighborhood
MF GO:0015294 solute:cation symporter activity IEP Neighborhood
MF GO:0015355 secondary active monocarboxylate transmembrane transporter activity IEP Neighborhood
MF GO:0015370 solute:sodium symporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
MF GO:0140161 monocarboxylate:sodium symporter activity IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 651 696
IPR002885 Pentatricopeptide_repeat 551 579
IPR002885 Pentatricopeptide_repeat 347 376
IPR002885 Pentatricopeptide_repeat 450 482
IPR002885 Pentatricopeptide_repeat 317 341
No external refs found!