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AT1G63400


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0005757 (Archaeplastida) Phylogenetic Tree(s): OG0005757_tree ,
OG_05_0003900 (LandPlants) Phylogenetic Tree(s): OG_05_0003900_tree ,
OG_06_0002486 (SeedPlants) Phylogenetic Tree(s): OG_06_0002486_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G63400
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AT1G62670 RPF2 rna processing factor 2 0.04 Archaeplastida
AT1G63080 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G16640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000076 DNA replication checkpoint IEP Neighborhood
BP GO:0000374 Group III intron splicing IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004016 adenylate cyclase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0007050 cell cycle arrest IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009956 radial pattern formation IEP Neighborhood
MF GO:0009975 cyclase activity IEP Neighborhood
BP GO:0010496 intercellular transport IEP Neighborhood
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Neighborhood
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Neighborhood
MF GO:0016849 phosphorus-oxygen lyase activity IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0046937 phytochelatin metabolic process IEP Neighborhood
BP GO:0046938 phytochelatin biosynthetic process IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0090057 root radial pattern formation IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 188 237
IPR002885 Pentatricopeptide_repeat 398 445
IPR002885 Pentatricopeptide_repeat 328 376
IPR002885 Pentatricopeptide_repeat 119 167
IPR002885 Pentatricopeptide_repeat 468 517
IPR002885 Pentatricopeptide_repeat 259 307
IPR002885 Pentatricopeptide_repeat 534 567
No external refs found!