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  5. AMTR_s00185p00047700

AMTR_s00185p00047700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00185.19

Description : RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase


Gene families : OG0004105 (Archaeplastida) Phylogenetic Tree(s): OG0004105_tree ,
OG_05_0005233 (LandPlants) Phylogenetic Tree(s): OG_05_0005233_tree ,
OG_06_0006533 (SeedPlants) Phylogenetic Tree(s): OG_06_0006533_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00185p00047700
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02556p00000250 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
Cre04.g229948 No alias RNA processing.RNA modification.dihydrouridylation.tRNA... 0.01 Archaeplastida
GSVIVT01024158001 No alias RNA processing.RNA modification.dihydrouridylation.tRNA... 0.04 Archaeplastida
LOC_Os04g02730.1 No alias tRNA dihydrouridine synthase 0.02 Archaeplastida
Smo409324 No alias tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like... 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006433 prolyl-tRNA aminoacylation IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
InterPro domains Description Start Stop
IPR001269 tRNA_hU_synthase 434 611
No external refs found!