1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00218p00019950

AMTR_s00218p00019950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00218.5

Description : DNA damage response.DNA repair polymerase activities.DNA polymerase theta (TEB)


Gene families : OG0002210 (Archaeplastida) Phylogenetic Tree(s): OG0002210_tree ,
OG_05_0003355 (LandPlants) Phylogenetic Tree(s): OG_05_0003355_tree ,
OG_06_0006737 (SeedPlants) Phylogenetic Tree(s): OG_06_0006737_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00218p00019950
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT4G32700 No alias No description available 0.04 Archaeplastida
Cpa|evm.model.tig00001331.2 No alias Helicase and polymerase-containing protein TEBICHI... 0.01 Archaeplastida
LOC_Os12g19370.1 No alias DNA polymerase theta (TEB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008026 ATP-dependent helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 585 759
IPR001650 Helicase_C 893 965
No external refs found!