AMTR_s00218p00024050 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00218.6

Description : DNA damage response.DNA repair polymerase activities.DNA polymerase theta (TEB)

Gene families : OG0002210 (Archaeplastida) Phylogenetic Tree(s): OG0002210_tree ,
OG_05_0003355 (LandPlants) Phylogenetic Tree(s): OG_05_0003355_tree ,
OG_06_0006737 (SeedPlants) Phylogenetic Tree(s): OG_06_0006737_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00218p00024050
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os12g19370.1	No alias	DNA polymerase theta (TEB)	0.03	Archaeplastida
MA_10435776g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c5_12930V3.1	No alias	helicases;ATP-dependent helicases;nucleic acid...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	Neighborhood
MF	GO:0004152	dihydroorotate dehydrogenase activity	IEP	Neighborhood
MF	GO:0004221	obsolete ubiquitin thiolesterase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006222	UMP biosynthetic process	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008373	sialyltransferase activity	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0009119	ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0009129	pyrimidine nucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009130	pyrimidine nucleoside monophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009163	nucleoside biosynthetic process	IEP	Neighborhood
BP	GO:0009173	pyrimidine ribonucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009174	pyrimidine ribonucleoside monophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Neighborhood
MF	GO:0016635	oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
BP	GO:0046049	UMP metabolic process	IEP	Neighborhood
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0046132	pyrimidine ribonucleoside biosynthetic process	IEP	Neighborhood
BP	GO:0046134	pyrimidine nucleoside biosynthetic process	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001098	DNA-dir_DNA_pol_A_palm_dom	614	1027

External Links

No external refs found!

AMTR_s00218p00024050 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation