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Aliases : evm_27.TU.AmTr_v1.0_scaffold00423.1
Description : 5-3 exoribonuclease 3 OS=Arabidopsis thaliana
Gene families : OG0000811 (Archaeplastida) Phylogenetic Tree(s): OG0000811_tree ,
OG_05_0000830 (LandPlants) Phylogenetic Tree(s): OG_05_0000830_tree ,
OG_06_0024805 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00423p00011960 | |
| Cluster | HCCA: Cluster_128 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00024460 | evm_27.TU.AmTr_v1... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| AMTR_s00204p00040220 | evm_27.TU.AmTr_v1... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| Cre08.g373916 | No alias | 5-3 exoribonuclease 2 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
| Solyc12g089280.2.1 | No alias | exoribonuclease (RAT1/XRN2) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0004527 | exonuclease activity | IEA | Interproscan |
| CC | GO:0005622 | intracellular | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000221 | vacuolar proton-transporting V-type ATPase, V1 domain | IEP | Neighborhood |
| MF | GO:0003964 | RNA-directed DNA polymerase activity | IEP | Neighborhood |
| MF | GO:0004565 | beta-galactosidase activity | IEP | Neighborhood |
| MF | GO:0008373 | sialyltransferase activity | IEP | Neighborhood |
| CC | GO:0009341 | beta-galactosidase complex | IEP | Neighborhood |
| MF | GO:0015925 | galactosidase activity | IEP | Neighborhood |
| BP | GO:0015988 | energy coupled proton transmembrane transport, against electrochemical gradient | IEP | Neighborhood |
| BP | GO:0015991 | ATP hydrolysis coupled proton transport | IEP | Neighborhood |
| MF | GO:0019829 | cation-transporting ATPase activity | IEP | Neighborhood |
| MF | GO:0022853 | active ion transmembrane transporter activity | IEP | Neighborhood |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | Neighborhood |
| CC | GO:0033180 | proton-transporting V-type ATPase, V1 domain | IEP | Neighborhood |
| MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
| MF | GO:0036442 | proton-exporting ATPase activity | IEP | Neighborhood |
| MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
| MF | GO:0042625 | ATPase coupled ion transmembrane transporter activity | IEP | Neighborhood |
| CC | GO:0044437 | vacuolar part | IEP | Neighborhood |
| MF | GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | IEP | Neighborhood |
| MF | GO:0046961 | proton-transporting ATPase activity, rotational mechanism | IEP | Neighborhood |
| BP | GO:0090662 | ATP hydrolysis coupled transmembrane transport | IEP | Neighborhood |
| BP | GO:0099131 | ATP hydrolysis coupled ion transmembrane transport | IEP | Neighborhood |
| BP | GO:0099132 | ATP hydrolysis coupled cation transmembrane transport | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004859 | Put_53exo | 1 | 67 |
| No external refs found! |