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  5. AMTR_s00587p00011650

AMTR_s00587p00011650 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00587.1

Description : Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0008982 (LandPlants) Phylogenetic Tree(s): OG_05_0008982_tree ,
OG_06_0011183 (SeedPlants) Phylogenetic Tree(s): OG_06_0011183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00587p00011650
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT5G13270 RARE1 Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
GSVIVT01025607001 No alias Pentatricopeptide repeat-containing protein At5g42450,... 0.01 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0008219 cell death IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 386 433
IPR002885 Pentatricopeptide_repeat 286 332
IPR002885 Pentatricopeptide_repeat 459 484
IPR002885 Pentatricopeptide_repeat 489 516
IPR002885 Pentatricopeptide_repeat 85 115
IPR002885 Pentatricopeptide_repeat 259 282
IPR002885 Pentatricopeptide_repeat 360 381
IPR002885 Pentatricopeptide_repeat 158 185
IPR002885 Pentatricopeptide_repeat 187 212
IPR002885 Pentatricopeptide_repeat 52 79
No external refs found!