AT1G64310


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0009772 (Archaeplastida) Phylogenetic Tree(s): OG0009772_tree ,
OG_05_0010563 (LandPlants) Phylogenetic Tree(s): OG_05_0010563_tree ,
OG_06_0010228 (SeedPlants) Phylogenetic Tree(s): OG_06_0010228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G64310
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00146p00058250 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_09147 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_745151g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Solyc03g112420.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Zm00001e001200_P001 No alias Pentatricopeptide repeat-containing protein At5g59600... 0.03 Archaeplastida
Zm00001e020753_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0010074 maintenance of meristem identity IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
BP GO:0016554 cytidine to uridine editing IEP Neighborhood
BP GO:0019827 stem cell population maintenance IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0070922 small RNA loading onto RISC IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0098727 maintenance of cell number IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 146 166
IPR002885 Pentatricopeptide_repeat 73 100
IPR002885 Pentatricopeptide_repeat 175 202
IPR002885 Pentatricopeptide_repeat 274 303
IPR002885 Pentatricopeptide_repeat 372 421
No external refs found!