AMTR_s01723p00004890 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold01723.1

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase

Gene families : OG0000439 (Archaeplastida) Phylogenetic Tree(s): OG0000439_tree ,
OG_05_0010853 (LandPlants) Phylogenetic Tree(s): OG_05_0010853_tree ,
OG_06_0040536 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s01723p00004890
Cluster	HCCA: Cluster_128

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00131000	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	Archaeplastida
AMTR_s00029p00215880	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.07	Archaeplastida
AT5G20940	No alias	Glycosyl hydrolase family protein	0.02	Archaeplastida
Gb_34627	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.03	Archaeplastida
LOC_Os02g03870.1	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.02	Archaeplastida
LOC_Os03g53860.1	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.05	Archaeplastida
Solyc04g015560.4.1	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.03	Archaeplastida
Zm00001e012037_P001	No alias	Enzyme classification.EC_3 hydrolases.EC_3.2...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0015928	fucosidase activity	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002772	Glyco_hydro_3_C	14	200

External Links

No external refs found!