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  5. AMTR_s01818p00007440

AMTR_s01818p00007440 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold01818.1

Description : Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0010115 (Archaeplastida) Phylogenetic Tree(s): OG0010115_tree ,
OG_05_0010163 (LandPlants) Phylogenetic Tree(s): OG_05_0010163_tree ,
OG_06_0009067 (SeedPlants) Phylogenetic Tree(s): OG_06_0009067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s01818p00007440
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Gb_34150 No alias Pentatricopeptide repeat-containing protein At1g22960,... 0.02 Archaeplastida
Zm00001e024139_P001 No alias Pentatricopeptide repeat-containing protein At1g22960,... 0.07 Archaeplastida
Zm00001e039372_P001 No alias Pentatricopeptide repeat-containing protein At1g22960,... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 180 211
IPR002885 Pentatricopeptide_repeat 396 441
IPR002885 Pentatricopeptide_repeat 323 370
IPR002885 Pentatricopeptide_repeat 218 267
IPR002885 Pentatricopeptide_repeat 116 162
IPR002885 Pentatricopeptide_repeat 43 92
IPR002885 Pentatricopeptide_repeat 292 321
No external refs found!