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  5. AMTR_s01922p00004790

AMTR_s01922p00004790 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold01922.1

Description : DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica


Gene families : OG0006468 (Archaeplastida) Phylogenetic Tree(s): OG0006468_tree ,
OG_05_0004455 (LandPlants) Phylogenetic Tree(s): OG_05_0004455_tree ,
OG_06_0002866 (SeedPlants) Phylogenetic Tree(s): OG_06_0002866_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s01922p00004790
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00095710 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00040p00218960 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00040p00219400 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00040p00220090 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00040p00220690 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 2 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00040p00221100 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00040p00221190 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00040p00221850 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa... 0.04 Archaeplastida
AMTR_s00040p00221930 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001025 BAH_dom 737 824
IPR022702 Cytosine_MeTrfase1_RFD 325 447
IPR022702 Cytosine_MeTrfase1_RFD 23 147
No external refs found!