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  5. AMTR_s02071p00004290

AMTR_s02071p00004290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold02071.2

Description : 30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa


Gene families : OG0008675 (Archaeplastida) Phylogenetic Tree(s): OG0008675_tree ,
OG_05_0010189 (LandPlants) Phylogenetic Tree(s): OG_05_0010189_tree ,
OG_06_0010242 (SeedPlants) Phylogenetic Tree(s): OG_06_0010242_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s02071p00004290
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
ATCG00905 RPS12, RPS12C ribosomal protein S12C 0.05 Archaeplastida
ATCG01230 RPS12B, RPS12 ribosomal protein S12B 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0042773 ATP synthesis coupled electron transport IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 45 137
No external refs found!