Aliases : evm_27.TU.AmTr_v1.0_scaffold02193.1
Description : Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0008982 (LandPlants) Phylogenetic Tree(s): OG_05_0008982_tree ,
OG_06_0011183 (SeedPlants) Phylogenetic Tree(s): OG_06_0011183_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s02193p00008230 | |
Cluster | HCCA: Cluster_249 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G11290 | CRR22 | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Archaeplastida | |
AT1G15510 | VAC1, ECB2, ATECB2 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Archaeplastida | |
AT1G18485 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Archaeplastida | |
AT2G02980 | OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT2G04860 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT2G22070 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | Archaeplastida | |
AT3G03580 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
AT3G16610 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Archaeplastida | |
AT3G22150 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
AT3G57430 | OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT3G63370 | OTP86 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Archaeplastida | |
AT4G13650 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
AT5G03800 | emb1899, EMB175, EMB166 | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Archaeplastida | |
AT5G16860 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
AT5G55740 | CRR21 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
GSVIVT01005577001 | No alias | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
GSVIVT01008965001 | No alias | Pentatricopeptide repeat-containing protein At4g18520,... | 0.03 | Archaeplastida | |
GSVIVT01009789001 | No alias | Pentatricopeptide repeat-containing protein At1g19720... | 0.02 | Archaeplastida | |
GSVIVT01015233001 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.02 | Archaeplastida | |
GSVIVT01017209001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01017365001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
GSVIVT01021756001 | No alias | Pentatricopeptide repeat-containing protein At4g21300... | 0.06 | Archaeplastida | |
GSVIVT01022894001 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.04 | Archaeplastida | |
GSVIVT01025295001 | No alias | Pentatricopeptide repeat-containing protein At2g22410,... | 0.03 | Archaeplastida | |
GSVIVT01026181001 | No alias | Pentatricopeptide repeat-containing protein At5g08305... | 0.05 | Archaeplastida | |
GSVIVT01027196001 | No alias | Pentatricopeptide repeat-containing protein At5g08510... | 0.02 | Archaeplastida | |
GSVIVT01029382001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
GSVIVT01030248001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
GSVIVT01033389001 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
GSVIVT01035920001 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.02 | Archaeplastida | |
GSVIVT01036169001 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.04 | Archaeplastida | |
GSVIVT01036788001 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
GSVIVT01036975001 | No alias | Pentatricopeptide repeat-containing protein At4g33990... | 0.03 | Archaeplastida | |
GSVIVT01037258001 | No alias | Pentatricopeptide repeat-containing protein At5g27110... | 0.02 | Archaeplastida | |
Gb_00776 | No alias | Pentatricopeptide repeat-containing protein At5g50390,... | 0.03 | Archaeplastida | |
Gb_21443 | No alias | Pentatricopeptide repeat-containing protein At3g63370,... | 0.06 | Archaeplastida | |
Gb_26526 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.02 | Archaeplastida | |
Gb_36806 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Archaeplastida | |
LOC_Os01g41650.1 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
LOC_Os01g46230.1 | No alias | RNA editing factor (MEF1) | 0.02 | Archaeplastida | |
LOC_Os02g09800.1 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.02 | Archaeplastida | |
LOC_Os02g50280.1 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
LOC_Os03g04390.1 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.02 | Archaeplastida | |
LOC_Os03g59264.1 | No alias | lectin chaperone (CRT) | 0.04 | Archaeplastida | |
LOC_Os04g39410.1 | No alias | RNA editing factor (OTP86) | 0.03 | Archaeplastida | |
LOC_Os05g12130.1 | No alias | RNA editing factor (ECD1) | 0.04 | Archaeplastida | |
LOC_Os05g24150.1 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.04 | Archaeplastida | |
LOC_Os05g38190.2 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.02 | Archaeplastida | |
LOC_Os05g49920.1 | No alias | RNA editing factor (ECB2/VAC1) | 0.04 | Archaeplastida | |
LOC_Os06g40860.1 | No alias | Pentatricopeptide repeat-containing protein At1g03540... | 0.02 | Archaeplastida | |
LOC_Os07g39910.1 | No alias | Pentatricopeptide repeat-containing protein At1g25360... | 0.03 | Archaeplastida | |
LOC_Os08g04400.1 | No alias | Pentatricopeptide repeat-containing protein At5g50390,... | 0.02 | Archaeplastida | |
MA_100519g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.02 | Archaeplastida | |
MA_103698g0030 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
MA_10426444g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
MA_10431227g0020 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | Archaeplastida | |
MA_10433543g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
MA_123466g0010 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | Archaeplastida | |
MA_124868g0020 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
MA_135075g0020 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
MA_20622g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
MA_9526611g0020 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | Archaeplastida | |
Pp3c24_8560V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
Smo101239 | No alias | Pentatricopeptide repeat-containing protein At4g33990... | 0.03 | Archaeplastida | |
Smo465 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
Smo47998 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.03 | Archaeplastida | |
Smo84657 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.02 | Archaeplastida | |
Smo90123 | No alias | Pentatricopeptide repeat-containing protein At3g22690... | 0.02 | Archaeplastida | |
Smo98955 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida | |
Smo99756 | No alias | Pentatricopeptide repeat-containing protein At2g39620... | 0.02 | Archaeplastida | |
Solyc01g007850.2.1 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
Solyc01g095690.2.1 | No alias | Pentatricopeptide repeat-containing protein At4g01030,... | 0.02 | Archaeplastida | |
Solyc02g088470.1.1 | No alias | Pentatricopeptide repeat-containing protein At3g29230... | 0.03 | Archaeplastida | |
Solyc03g119950.1.1 | No alias | RNA editing factor (ECB2/VAC1) | 0.02 | Archaeplastida | |
Solyc04g076800.3.1 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
Solyc08g013850.1.1 | No alias | RNA editing factor (CRR21) | 0.07 | Archaeplastida | |
Solyc09g082450.1.1 | No alias | RNA editing factor (YS1) | 0.03 | Archaeplastida | |
Solyc11g017370.3.1 | No alias | RNA editing factor (AEF1) | 0.04 | Archaeplastida | |
Solyc11g065250.1.1 | No alias | Pentatricopeptide repeat-containing protein At5g39680... | 0.03 | Archaeplastida | |
Solyc11g066920.1.1 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.02 | Archaeplastida | |
Zm00001e000301_P001 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.02 | Archaeplastida | |
Zm00001e002552_P001 | No alias | RNA editing factor (SEL1/PDM1) | 0.03 | Archaeplastida | |
Zm00001e015440_P001 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
Zm00001e028503_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
Zm00001e029119_P001 | No alias | Pentatricopeptide repeat-containing protein At2g33760... | 0.04 | Archaeplastida | |
Zm00001e029186_P001 | No alias | Pentatricopeptide repeat-containing protein At1g19720... | 0.02 | Archaeplastida | |
Zm00001e031351_P001 | No alias | RNA editing factor (ECD1) | 0.02 | Archaeplastida | |
Zm00001e032499_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0000175 | 3'-5'-exoribonuclease activity | IEP | Neighborhood |
CC | GO:0000228 | nuclear chromosome | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Neighborhood |
MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
MF | GO:0004532 | exoribonuclease activity | IEP | Neighborhood |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Neighborhood |
MF | GO:0004784 | superoxide dismutase activity | IEP | Neighborhood |
MF | GO:0004832 | valine-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0005319 | lipid transporter activity | IEP | Neighborhood |
MF | GO:0005342 | organic acid transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0005343 | organic acid:sodium symporter activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005694 | chromosome | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
BP | GO:0006298 | mismatch repair | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Neighborhood |
BP | GO:0006801 | superoxide metabolic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0006814 | sodium ion transport | IEP | Neighborhood |
MF | GO:0008028 | monocarboxylic acid transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
MF | GO:0008508 | bile acid:sodium symporter activity | IEP | Neighborhood |
MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
MF | GO:0015081 | sodium ion transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015125 | bile acid transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015293 | symporter activity | IEP | Neighborhood |
MF | GO:0015294 | solute:cation symporter activity | IEP | Neighborhood |
MF | GO:0015355 | secondary active monocarboxylate transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015370 | solute:sodium symporter activity | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Neighborhood |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Neighborhood |
MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0016896 | exoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0019238 | cyclohydrolase activity | IEP | Neighborhood |
MF | GO:0019239 | deaminase activity | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
CC | GO:0030684 | preribosome | IEP | Neighborhood |
MF | GO:0030983 | mismatched DNA binding | IEP | Neighborhood |
CC | GO:0032040 | small-subunit processome | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
MF | GO:0043531 | ADP binding | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
MF | GO:0046943 | carboxylic acid transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
MF | GO:0140161 | monocarboxylate:sodium symporter activity | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
MF | GO:1901618 | organic hydroxy compound transmembrane transporter activity | IEP | Neighborhood |
MF | GO:2001070 | starch binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 337 | 377 |
IPR002885 | Pentatricopeptide_repeat | 136 | 182 |
IPR002885 | Pentatricopeptide_repeat | 236 | 283 |
IPR002885 | Pentatricopeptide_repeat | 210 | 231 |
IPR002885 | Pentatricopeptide_repeat | 36 | 61 |
IPR002885 | Pentatricopeptide_repeat | 309 | 334 |
IPR002885 | Pentatricopeptide_repeat | 7 | 33 |
IPR002885 | Pentatricopeptide_repeat | 109 | 132 |
No external refs found! |