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  5. AMTR_s02768p00003550

AMTR_s02768p00003550


No description available


Gene families : OG0000166 (Archaeplastida) Phylogenetic Tree(s): OG0000166_tree ,
OG_05_0000070 (LandPlants) Phylogenetic Tree(s): OG_05_0000070_tree ,
OG_06_0000023 (SeedPlants) Phylogenetic Tree(s): OG_06_0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s02768p00003550
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00273120 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00013p00247680 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00014p00206620 No alias No description available 0.04 Archaeplastida
AMTR_s00018p00080360 No alias No description available 0.03 Archaeplastida
AMTR_s00019p00244510 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00023p00023350 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00037p00224340 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AMTR_s00063p00206790 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00064p00040440 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00067p00067210 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00071p00158330 No alias No description available 0.02 Archaeplastida
AMTR_s00089p00084560 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00091p00168090 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AMTR_s00095p00130850 No alias No description available 0.01 Archaeplastida
AMTR_s00108p00119250 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00143p00063650 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00161p00071160 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s03357p00002730 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s04199p00003110 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s05195p00001810 No alias No description available 0.03 Archaeplastida
AT1G43260 No alias hAT transposon superfamily protein 0.01 Archaeplastida
Solyc01g020480.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004813 alanine-tRNA ligase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006419 alanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR007021 DUF659 7 149
No external refs found!