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  5. AMTR_s05661p00002040

AMTR_s05661p00002040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold05661.1

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0001722 (Archaeplastida) Phylogenetic Tree(s): OG0001722_tree ,
OG_05_0001208 (LandPlants) Phylogenetic Tree(s): OG_05_0001208_tree ,
OG_06_0004046 (SeedPlants) Phylogenetic Tree(s): OG_06_0004046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s05661p00002040
Cluster HCCA: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g08290.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
LOC_Os08g44830.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_10428315g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_81876g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Mp7g07550.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Pp3c4_17700V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Zm00001e039485_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!