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  5. Cpa|evm.model.tig00000093.136

Cpa|evm.model.tig00000093.136


Description : Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana


Gene families : OG0004586 (Archaeplastida) Phylogenetic Tree(s): OG0004586_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000093.136
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00089870 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.04 Archaeplastida
GSVIVT01017346001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
LOC_Os05g07050.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 Archaeplastida
LOC_Os06g07080.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 Archaeplastida
MA_7388g0020 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.06 Archaeplastida
Mp1g12380.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.05 Archaeplastida
Pp3c24_20910V3.1 No alias Pre-mRNA-processing-splicing factor 0.04 Archaeplastida
Pp3c8_25090V3.1 No alias Pre-mRNA-processing-splicing factor 0.03 Archaeplastida
Smo173603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Zm00001e030094_P003 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.01 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012591 PRO8NT 49 159
No external refs found!