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  5. Cpa|evm.model.tig00000093.151

Cpa|evm.model.tig00000093.151


Description : DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000093.151
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00191130 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.01 Archaeplastida
AMTR_s00244p00011780 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 3B, chloroplastic OS=Zea mays 0.02 Archaeplastida
AT3G22330 PMH2, ATRH53 putative mitochondrial RNA helicase 2 0.02 Archaeplastida
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.03 Archaeplastida
GSVIVT01000821001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_10087 No alias DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa... 0.03 Archaeplastida
Gb_35745 No alias RH3 plastidial RNA basal splicing factor 0.02 Archaeplastida
LOC_Os12g41715.1 No alias RNA helicase (PMH) 0.01 Archaeplastida
MA_17924g0010 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e003219_P001 No alias RNA helicase (PMH) 0.01 Archaeplastida
Zm00001e006243_P001 No alias RH3 plastidial RNA basal splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 9 131
IPR001650 Helicase_C 174 275
IPR012562 GUCT 349 439
No external refs found!