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  5. Cpa|evm.model.tig00000142.8

Cpa|evm.model.tig00000142.8


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SPF31 pre-mRNA splicing factor


Gene families : OG0000171 (Archaeplastida) Phylogenetic Tree(s): OG0000171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000142.8
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
Cre03.g145127 No alias Cytoskeleton.microtubular network.Dynein... 0.02 Archaeplastida
Cre06.g250300 No alias Cytoskeleton.microtubular network.Dynein... 0.02 Archaeplastida
Cre09.g403800 No alias Cytoskeleton.microtubular network.Dynein... 0.02 Archaeplastida
Cre11.g476050 No alias Cytoskeleton.microtubular network.Dynein... 0.02 Archaeplastida
Gb_13876 No alias heavy chain of Dynein microtubule-based motor protein complex 0.01 Archaeplastida
Mp8g13050.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp8g13870.1 No alias heavy chain of Dynein microtubule-based motor protein complex 0.02 Archaeplastida
Pp3c12_9937V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c17_1970V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c22_18230V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c22_18240V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c23_17280V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c27_6210V3.1 No alias No annotation 0.01 Archaeplastida
Pp3c6_28550V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c7_8280V3.1 No alias No annotation 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEA Interproscan
BP GO:0007018 microtubule-based movement IEA Interproscan
CC GO:0030286 dynein complex IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR024743 Dynein_HC_stalk 1002 1124
IPR004273 Dynein_heavy_dom 1718 1798
IPR001623 DnaJ_domain 2182 2241
IPR035706 DHC_D5 1223 1388
IPR024317 Dynein_heavy_chain_D4_dom 771 812
IPR024317 Dynein_heavy_chain_D4_dom 661 769
No external refs found!