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  5. Cpa|evm.model.tig00000158.16

Cpa|evm.model.tig00000158.16


Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2


Gene families : OG0000520 (Archaeplastida) Phylogenetic Tree(s): OG0000520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000158.16
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00246930 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
AMTR_s00068p00181410 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
AT3G18090 NRPD2B nuclear RNA polymerase D2B 0.02 Archaeplastida
Cre02.g075150 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.06 Archaeplastida
GSVIVT01020543001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
GSVIVT01036597001 No alias DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_30006 No alias subunit 2 of Pol II RNA polymerase 0.02 Archaeplastida
LOC_Os03g44484.1 No alias DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.04 Archaeplastida
LOC_Os04g54840.1 No alias subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 Archaeplastida
LOC_Os08g07480.1 No alias subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.01 Archaeplastida
MA_10429035g0010 No alias DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.01 Archaeplastida
MA_10429035g0020 No alias subunit 2 of Pol II RNA polymerase 0.05 Archaeplastida
MA_10429035g0030 No alias DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis... 0.05 Archaeplastida
MA_10432131g0010 No alias DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.05 Archaeplastida
MA_342841g0010 No alias DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis... 0.02 Archaeplastida
Mp4g21160.1 No alias subunit 2 of Pol II RNA polymerase 0.02 Archaeplastida
Mp6g06170.1 No alias subunit 2 of Pol III RNA polymerase 0.02 Archaeplastida
Pp3c18_11070V3.1 No alias nuclear RNA polymerase C2 0.03 Archaeplastida
Pp3c2_10910V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Smo148107 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
Smo443461 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
Solyc02g078260.3.1 No alias subunit 2 of Pol II RNA polymerase 0.02 Archaeplastida
Solyc03g110880.4.1 No alias subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 Archaeplastida
Zm00001e006792_P001 No alias subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.01 Archaeplastida
Zm00001e012400_P001 No alias subunit 2 of Pol II RNA polymerase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 471 535
IPR007647 RNA_pol_Rpb2_5 638 691
IPR007644 RNA_pol_bsu_protrusion 43 447
IPR007646 RNA_pol_Rpb2_4 570 629
IPR007120 DNA-dir_RNAP_su2_dom 861 1079
IPR007120 DNA-dir_RNAP_su2_dom 709 758
IPR007642 RNA_pol_Rpb2_2 211 399
IPR007641 RNA_pol_Rpb2_7 1081 1151
No external refs found!