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Aliases : LINC1
Description : little nuclei1
Gene families : OG0002164 (Archaeplastida) Phylogenetic Tree(s): OG0002164_tree ,
OG_05_0001522 (LandPlants) Phylogenetic Tree(s): OG_05_0001522_tree ,
OG_06_0001206 (SeedPlants) Phylogenetic Tree(s): OG_06_0001206_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT1G67230 | |
| Cluster | HCCA: Cluster_11 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GSVIVT01011972001 | No alias | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.05 | Archaeplastida | |
| GSVIVT01031076001 | No alias | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.05 | Archaeplastida | |
| LOC_Os01g56140.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.06 | Archaeplastida | |
| LOC_Os02g48010.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.06 | Archaeplastida | |
| MA_31023g0010 | No alias | CRWN nuclear lamina lamin-like protein | 0.03 | Archaeplastida | |
| Mp3g21160.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.05 | Archaeplastida | |
| Solyc02g089800.3.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.03 | Archaeplastida | |
| Solyc02g091960.4.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.06 | Archaeplastida | |
| Solyc03g045050.4.1 | No alias | CRWN nuclear lamina lamin-like protein | 0.03 | Archaeplastida | |
| Zm00001e019705_P002 | No alias | CRWN nuclear lamina lamin-like protein | 0.06 | Archaeplastida | |
| Zm00001e023357_P001 | No alias | CRWN nuclear lamina lamin-like protein | 0.09 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IDA | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| CC | GO:0005652 | nuclear lamina | IDA | Interproscan |
| CC | GO:0005829 | cytosol | IDA | Interproscan |
| BP | GO:0006997 | nucleus organization | IMP | Interproscan |
| BP | GO:0006997 | nucleus organization | IGI | Interproscan |
| CC | GO:0034399 | nuclear periphery | IDA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Neighborhood |
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Neighborhood |
| BP | GO:0000904 | cell morphogenesis involved in differentiation | IEP | Neighborhood |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Neighborhood |
| BP | GO:0002252 | immune effector process | IEP | Neighborhood |
| BP | GO:0002376 | immune system process | IEP | Neighborhood |
| BP | GO:0002679 | respiratory burst involved in defense response | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003933 | GTP cyclohydrolase activity | IEP | Neighborhood |
| MF | GO:0003935 | GTP cyclohydrolase II activity | IEP | Neighborhood |
| MF | GO:0004084 | branched-chain-amino-acid transaminase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005516 | calmodulin binding | IEP | Neighborhood |
| CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
| CC | GO:0005744 | TIM23 mitochondrial import inner membrane translocase complex | IEP | Neighborhood |
| CC | GO:0005819 | spindle | IEP | Neighborhood |
| CC | GO:0005851 | eukaryotic translation initiation factor 2B complex | IEP | Neighborhood |
| BP | GO:0006401 | RNA catabolic process | IEP | Neighborhood |
| BP | GO:0006402 | mRNA catabolic process | IEP | Neighborhood |
| BP | GO:0006446 | regulation of translational initiation | IEP | Neighborhood |
| BP | GO:0006464 | cellular protein modification process | IEP | Neighborhood |
| BP | GO:0006486 | protein glycosylation | IEP | Neighborhood |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
| CC | GO:0008278 | cohesin complex | IEP | Neighborhood |
| BP | GO:0008284 | positive regulation of cell proliferation | IEP | Neighborhood |
| MF | GO:0008327 | methyl-CpG binding | IEP | Neighborhood |
| MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Neighborhood |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Neighborhood |
| CC | GO:0009524 | phragmoplast | IEP | Neighborhood |
| BP | GO:0009606 | tropism | IEP | Neighborhood |
| BP | GO:0009615 | response to virus | IEP | Neighborhood |
| BP | GO:0009629 | response to gravity | IEP | Neighborhood |
| BP | GO:0009630 | gravitropism | IEP | Neighborhood |
| BP | GO:0009846 | pollen germination | IEP | Neighborhood |
| BP | GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway | IEP | Neighborhood |
| BP | GO:0009873 | ethylene-activated signaling pathway | IEP | Neighborhood |
| BP | GO:0009886 | post-embryonic animal morphogenesis | IEP | Neighborhood |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0010052 | guard cell differentiation | IEP | Neighborhood |
| BP | GO:0010091 | trichome branching | IEP | Neighborhood |
| BP | GO:0010099 | regulation of photomorphogenesis | IEP | Neighborhood |
| MF | GO:0010178 | IAA-amino acid conjugate hydrolase activity | IEP | Neighborhood |
| MF | GO:0010179 | IAA-Ala conjugate hydrolase activity | IEP | Neighborhood |
| BP | GO:0010267 | production of ta-siRNAs involved in RNA interference | IEP | Neighborhood |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
| MF | GO:0015440 | peptide-transporting ATPase activity | IEP | Neighborhood |
| MF | GO:0015462 | ATPase-coupled protein transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0015804 | neutral amino acid transport | IEP | Neighborhood |
| BP | GO:0015824 | proline transport | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| CC | GO:0016363 | nuclear matrix | IEP | Neighborhood |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
| MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
| CC | GO:0017119 | Golgi transport complex | IEP | Neighborhood |
| MF | GO:0019238 | cyclohydrolase activity | IEP | Neighborhood |
| MF | GO:0019899 | enzyme binding | IEP | Neighborhood |
| BP | GO:0030422 | production of siRNA involved in RNA interference | IEP | Neighborhood |
| BP | GO:0031050 | dsRNA fragmentation | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| MF | GO:0033220 | amide-transporting ATPase activity | IEP | Neighborhood |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Neighborhood |
| BP | GO:0035196 | production of miRNAs involved in gene silencing by miRNA | IEP | Neighborhood |
| BP | GO:0035556 | intracellular signal transduction | IEP | Neighborhood |
| BP | GO:0036211 | protein modification process | IEP | Neighborhood |
| BP | GO:0042127 | regulation of cell proliferation | IEP | Neighborhood |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
| BP | GO:0043413 | macromolecule glycosylation | IEP | Neighborhood |
| MF | GO:0043424 | protein histidine kinase binding | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
| CC | GO:0044430 | cytoskeletal part | IEP | Neighborhood |
| BP | GO:0045597 | positive regulation of cell differentiation | IEP | Neighborhood |
| BP | GO:0045730 | respiratory burst | IEP | Neighborhood |
| BP | GO:0045931 | positive regulation of mitotic cell cycle | IEP | Neighborhood |
| BP | GO:0048518 | positive regulation of biological process | IEP | Neighborhood |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Neighborhood |
| BP | GO:0051026 | chiasma assembly | IEP | Neighborhood |
| BP | GO:0051607 | defense response to virus | IEP | Neighborhood |
| BP | GO:0051782 | negative regulation of cell division | IEP | Neighborhood |
| BP | GO:0070085 | glycosylation | IEP | Neighborhood |
| BP | GO:0070918 | production of small RNA involved in gene silencing by RNA | IEP | Neighborhood |
| BP | GO:0080001 | mucilage extrusion from seed coat | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |