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  5. Cpa|evm.model.tig00000169.6

Cpa|evm.model.tig00000169.6


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RACK1 associated component


Gene families : OG0002844 (Archaeplastida) Phylogenetic Tree(s): OG0002844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000169.6
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00058690 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
AT1G18080 ATARCA, RACK1A, RACK1A_AT Transducin/WD40 repeat-like superfamily protein 0.07 Archaeplastida
AT1G48630 RACK1B_AT receptor for activated C kinase 1B 0.1 Archaeplastida
AT3G18130 RACK1C_AT receptor for activated C kinase 1C 0.13 Archaeplastida
Cre06.g278222 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
GSVIVT01008395001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Gb_33900 No alias associated component RACK1 of SSU proteome 0.03 Archaeplastida
LOC_Os01g49290.1 No alias associated component RACK1 of SSU proteome 0.16 Archaeplastida
LOC_Os05g47890.1 No alias associated component RACK1 of SSU proteome 0.08 Archaeplastida
MA_10435947g0010 No alias Guanine nucleotide-binding protein subunit beta-like... 0.03 Archaeplastida
Mp3g15630.1 No alias associated component RACK1 of SSU proteome 0.18 Archaeplastida
Pp3c16_13180V3.1 No alias receptor for activated C kinase 1B 0.07 Archaeplastida
Pp3c27_6040V3.1 No alias receptor for activated C kinase 1B 0.11 Archaeplastida
Pp3c5_770V3.1 No alias receptor for activated C kinase 1B 0.14 Archaeplastida
Smo266532 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
Solyc03g119040.3.1 No alias associated component RACK1 of SSU proteome 0.17 Archaeplastida
Solyc06g069010.3.1 No alias associated component RACK1 of SSU proteome 0.17 Archaeplastida
Zm00001e026456_P001 No alias associated component RACK1 of SSU proteome 0.13 Archaeplastida
Zm00001e032340_P001 No alias associated component RACK1 of SSU proteome 0.16 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 218 253
IPR001680 WD40_repeat 279 303
IPR001680 WD40_repeat 179 213
IPR001680 WD40_repeat 98 134
IPR001680 WD40_repeat 11 45
IPR001680 WD40_repeat 59 92
No external refs found!