AT1G67990 (TSM1, ATTSM1)

Aliases : TSM1, ATTSM1

Description : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Gene families : OG0000361 (Archaeplastida) Phylogenetic Tree(s): OG0000361_tree ,
OG_05_0011406 (LandPlants) Phylogenetic Tree(s): OG_05_0011406_tree ,
OG_06_0010876 (SeedPlants) Phylogenetic Tree(s): OG_06_0010876_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G67990
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00228690	evm_27.TU.AmTr_v1...	Cell wall.lignin.monolignol synthesis.caffeoyl-CoA...	0.06	Archaeplastida
AT1G24735	No alias	S-adenosyl-L-methionine-dependent methyltransferases...	0.04	Archaeplastida
AT3G61990	OMTF3	S-adenosyl-L-methionine-dependent methyltransferases...	0.03	Archaeplastida
AT4G34050	CCoAOMT1	S-adenosyl-L-methionine-dependent methyltransferases...	0.05	Archaeplastida
GSVIVT01031715001	No alias	Cell wall.lignin.monolignol synthesis.caffeoyl-CoA...	0.05	Archaeplastida
Gb_18170	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.03	Archaeplastida
Gb_23219	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.02	Archaeplastida
Gb_23220	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.04	Archaeplastida
LOC_Os08g38900.1	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.04	Archaeplastida
LOC_Os08g38910.2	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.02	Archaeplastida
LOC_Os09g30360.1	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.05	Archaeplastida
MA_10428317g0010	No alias	Caffeoyl-CoA O-methyltransferase OS=Pinus taeda...	0.03	Archaeplastida
MA_4674g0010	No alias	Enzyme classification.EC_2 transferases.EC_2.1...	0.02	Archaeplastida
MA_681896g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_6931g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Smo271191	No alias	Cell wall.lignin.monolignol synthesis.caffeoyl-CoA...	0.03	Archaeplastida
Smo405144	No alias	Caffeoyl-CoA O-methyltransferase 2 OS=Populus trichocarpa	0.02	Archaeplastida
Smo80209	No alias	Cell wall.lignin.monolignol synthesis.caffeoyl-CoA...	0.08	Archaeplastida
Solyc03g032220.3.1	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.03	Archaeplastida
Solyc05g026040.1.1	No alias	Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes...	0.05	Archaeplastida
Solyc05g041270.1.1	No alias	Putative caffeoyl-CoA O-methyltransferase At1g67980...	0.01	Archaeplastida
Solyc05g041620.3.1	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.03	Archaeplastida
Solyc05g041690.3.1	No alias	Enzyme classification.EC_2 transferases.EC_2.1...	0.04	Archaeplastida
Solyc05g041950.1.1	No alias	Enzyme classification.EC_2 transferases.EC_2.1...	0.03	Archaeplastida
Zm00001e024348_P001	No alias	caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008171	O-methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010208	pollen wall assembly	None	Extended
BP	GO:0010584	pollen exine formation	RCA	Interproscan
BP	GO:0010927	cellular component assembly involved in morphogenesis	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0042409	caffeoyl-CoA O-methyltransferase activity	IDA	Interproscan
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048316	seed development	IMP	Interproscan
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0080012	trihydroxyferuloyl spermidine O-methyltransferase activity	IDA	Interproscan
MF	GO:0080012	trihydroxyferuloyl spermidine O-methyltransferase activity	IMP	Interproscan
MF	GO:0080076	caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity	IDA	Interproscan
MF	GO:0080077	trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity	IDA	Interproscan
MF	GO:0080078	tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity	IDA	Interproscan
BP	GO:0080088	spermidine hydroxycinnamate conjugate biosynthetic process	IDA	Interproscan
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	Neighborhood
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Neighborhood
BP	GO:0006595	polyamine metabolic process	IEP	Neighborhood
BP	GO:0008216	spermidine metabolic process	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0009554	megasporogenesis	IEP	Neighborhood
BP	GO:0009556	microsporogenesis	IEP	Neighborhood
BP	GO:0009943	adaxial/abaxial axis specification	IEP	Neighborhood
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	Neighborhood
MF	GO:0016298	lipase activity	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0019915	lipid storage	IEP	Neighborhood
BP	GO:0019953	sexual reproduction	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0034293	sexual sporulation	IEP	Neighborhood
BP	GO:0035445	borate transmembrane transport	IEP	Neighborhood
BP	GO:0042335	cuticle development	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0043934	sporulation	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
BP	GO:0044703	multi-organism reproductive process	IEP	Neighborhood
BP	GO:0046713	borate transport	IEP	Neighborhood
MF	GO:0046715	active borate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0048236	plant-type sporogenesis	IEP	Neighborhood
BP	GO:0048533	sporocyte differentiation	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
MF	GO:0050734	hydroxycinnamoyltransferase activity	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051321	meiotic cell cycle	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
MF	GO:0072532	tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072533	tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072547	tricoumaroylspermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072548	dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072549	monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072550	triferuloylspermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072551	diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0072552	monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	Neighborhood
MF	GO:0080072	spermidine:sinapoyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080073	spermidine:coumaroyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080074	spermidine:caffeoyl CoA N-acyltransferase activity	IEP	Neighborhood
MF	GO:0080075	spermidine:feruloyl CoA N-acyltransferase activity	IEP	Neighborhood
BP	GO:0090691	formation of plant organ boundary	IEP	Neighborhood
BP	GO:0097164	ammonium ion metabolic process	IEP	Neighborhood
BP	GO:0098661	inorganic anion transmembrane transport	IEP	Neighborhood
BP	GO:1900150	regulation of defense response to fungus	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002935	O-MeTrfase_3	21	231

External Links

No external refs found!

AT1G67990 (TSM1, ATTSM1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation