AT1G06440

Description : Ubiquitin carboxyl-terminal hydrolase family protein

Gene families : OG0002397 (Archaeplastida) Phylogenetic Tree(s): OG0002397_tree ,
OG_05_0001647 (LandPlants) Phylogenetic Tree(s): OG_05_0001647_tree ,
OG_06_0006838 (SeedPlants) Phylogenetic Tree(s): OG_06_0006838_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G06440
Cluster	HCCA: Cluster_232

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00055p00024110	evm_27.TU.AmTr_v1...	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
LOC_Os01g43040.1	No alias	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis...	0.02	Archaeplastida
Solyc06g063270.4.1	No alias	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e004384_P001	No alias	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021099	PORR_domain	36	374

External Links

No external refs found!