1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000241.15

Cpa|evm.model.tig00000241.15


Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1


Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000241.15
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00196820 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 Archaeplastida
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 Archaeplastida
Cre03.g165750 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 Archaeplastida
Cre16.g680900 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
GSVIVT01008740001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
GSVIVT01013491001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
GSVIVT01019869001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 Archaeplastida
Gb_06029 No alias subunit 1 of Pol II RNA polymerase 0.03 Archaeplastida
Gb_11654 No alias subunit 1 of Pol IV RNA polymerase 0.01 Archaeplastida
Gb_21425 No alias subunit 1 of Pol V RNA polymerase 0.06 Archaeplastida
Gb_24058 No alias subunit 1 of Pol IV RNA polymerase 0.03 Archaeplastida
Gb_33197 No alias subunit 1 of Pol II RNA polymerase 0.04 Archaeplastida
LOC_Os02g05880.1 No alias subunit 1 of Pol V RNA polymerase 0.03 Archaeplastida
MA_10429268g0010 No alias subunit 1 of Pol IV RNA polymerase 0.01 Archaeplastida
MA_10436091g0010 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis... 0.05 Archaeplastida
MA_8544g0010 No alias subunit 1 of Pol II RNA polymerase 0.04 Archaeplastida
MA_8720349g0010 No alias subunit 1 of Pol V RNA polymerase 0.01 Archaeplastida
Mp4g14340.1 No alias subunit 1 of Pol II RNA polymerase 0.02 Archaeplastida
Mp7g16790.1 No alias subunit 1 of Pol III RNA polymerase 0.02 Archaeplastida
Pp3c15_5270V3.1 No alias nuclear RNA polymerase D1B 0.03 Archaeplastida
Pp3c17_4860V3.1 No alias nuclear RNA polymerase C1 0.04 Archaeplastida
Pp3c1_32300V3.1 No alias RNA polymerase II large subunit 0.06 Archaeplastida
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
Solyc01g096390.4.1 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida
Solyc11g072730.2.1 No alias subunit 1 of Pol III RNA polymerase 0.02 Archaeplastida
Zm00001e007729_P001 No alias subunit 1 of Pol III RNA polymerase 0.03 Archaeplastida
Zm00001e025206_P001 No alias subunit 1 of Pol V RNA polymerase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 273 319
IPR000722 RNA_pol_asu 321 477
IPR007080 RNA_pol_Rpb1_1 13 275
IPR007073 RNA_pol_Rpb1_7 1068 1205
IPR007066 RNA_pol_Rpb1_3 481 619
IPR007083 RNA_pol_Rpb1_4 646 750
IPR007075 RNA_pol_Rpb1_6 823 897
IPR007075 RNA_pol_Rpb1_6 898 985
IPR007081 RNA_pol_Rpb1_5 757 1326
No external refs found!