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  5. Cpa|evm.model.tig00000310.30

Cpa|evm.model.tig00000310.30


Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Gar1 core component


Gene families : OG0005231 (Archaeplastida) Phylogenetic Tree(s): OG0005231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000310.30
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.03 Archaeplastida
Cre13.g567850 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 Archaeplastida
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 Archaeplastida
Gb_17575 No alias core component Gar1 of H/ACA small nucleolar... 0.01 Archaeplastida
Gb_24533 No alias core component Gar1 of H/ACA small nucleolar... 0.04 Archaeplastida
LOC_Os11g37080.1 No alias core component Gar1 of H/ACA small nucleolar... 0.03 Archaeplastida
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.1 Archaeplastida
Pp3c5_28430V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.02 Archaeplastida
Smo266974 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 Archaeplastida
Solyc10g078540.3.1 No alias core component Gar1 of H/ACA small nucleolar... 0.04 Archaeplastida
Zm00001e011244_P001 No alias core component Gar1 of H/ACA small nucleolar... 0.02 Archaeplastida
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 22 103
No external refs found!